TTRMDb
An amyloid disease database for transthyretin mutants
Sequence
Analysis Tool |
Result |
iMutant 3.0 | Destabilizing |
STRUM | Destabilizing |
iStable | Destabilizing |
Provean | Deleterious |
PredictSNP | Deleterious |
PhD-SNP | Deleterious |
PolyPhen-2 | Deleterious |
SIFT | Deleterious |
FATHMM | Damaging |
Structure
Analysis Tool |
Result |
mCSM | Destabilizing |
SDM | Destabilizing |
DUET | Destabilizing |
DynaMut | Destabilizing |
CUPSAT | Destabilizing |
ENCoM | Destabilizing |
FoldX (Protein Stability) | Reduces |
Aggregation
Analysis Tool |
Result |
TANGO (Aggregation Tendency) | No effect |
WALTZ (Amyloid Propensity) | No effect |
LIMBO (Chaperone Binding Tendency) | No effect |
Reported Articles
- Azevedo EPC, Pereira HM, Garratt RC, Kelly JW, Foguel D, Palhano FL. Dissecting the structure,
thermodynamic stability, and aggregation properties of the A25T transthyretin (A25T-TTR) variant involved
in leptomeningeal amyloidosis: identifying protein partners that co-aggregate during A25T-TTR
fibrillogenesis in cerebrospinal fluid. Biochemistry. 2011;50: 11070–11083. doi:10.1021/bi201365r
- Llull L, Berenguer J, Yagüe J, Graus F. Leptomeningeal amyloidosis due to A25T TTR mutation: a case
report. Neurologia. 2014;29: 382–384. doi:10.1016/j.nrl.2012.12.006
- Sekijima Y, Hammarström P, Matsumura M, Shimizu Y, Iwata M, Tokuda T, et al. Energetic characteristics of
the new transthyretin variant A25T may explain its atypical central nervous system pathology. Lab Invest.
2003;83: 409–417.
- Azevedo EP, Ledo JH, Barbosa G, Sobrinho M, Diniz L, Fonseca ACC, et al. Activated microglia mediate
synapse loss and short-term memory deficits in a mouse model of transthyretin-related oculoleptomeningeal
amyloidosis. Cell Death & Disease. 2013;4: e789. doi:10.1038/cddis.2013.325
Studies on Therapeutic Strategy*
- Loconte V, Menozzi I, Ferrari A, Folli C, Imbimbo BP, Zanotti G, et al.
Structure-activity relationships of flurbiprofen analogues as stabilizers of
the amyloidogenic protein transthyretin. Journal of Structural Biology.
2019; doi:10.1016/j.jsb.2019.08.011
- Tojo K, Sekijima Y, Kelly JW, Ikeda S. Diflunisal stabilizes familial amyloid
polyneuropathy-associated transthyretin variant tetramers in serum against
dissociation required for amyloidogenesis. Neuroscience Research.
2006;56: 441–449. doi:10.1016/j.neures.2006.08.014
*includes studies on model organisms and commercially unavailable drugs
Available PDB Structures