TTRMDb
An amyloid disease database for transthyretin mutants
Sequence
Analysis Tool |
Result |
iMutant 3.0 | Destabilizing |
STRUM | Destabilizing |
iStable | Destabilizing |
Provean | Deleterious |
PredictSNP | Deleterious |
PhD-SNP | Deleterious |
PolyPhen-2 | Deleterious |
SIFT | Deleterious |
FATHMM | Damaging |
Structure
Analysis Tool |
Result |
mCSM | Destabilizing |
SDM | Destabilizing |
DUET | Destabilizing |
DynaMut | Destabilizing |
CUPSAT | Destabilizing |
ENCoM | Destabilizing |
FoldX (Protein Stability) | Severely Reduces |
Aggregation
Analysis Tool |
Result |
TANGO (Aggregation Tendency) | No effect |
WALTZ (Amyloid Propensity) | No effect |
LIMBO (Chaperone Binding Tendency) | No effect |
Reported Articles
- Jacobson DR, McFarlin DE, Kane I, and Buxbaum JN. (1992). Transthyretin Pro55, a variant associated with
early-onset, aggressive diffuse amyloidosis with cardiac and neurologic involvement. Hum Genet.
89:353-356.
- McCutchen SL, Colon W, and Kelly JW. (1993). Transthyretin mutation Leu-55-Pro significantly alters
tetramer stability and increases amyloidogenicity. 32:12119-12127.
- Yamamoto K, Hsu SP, Yoshida K, Ikeda S, Nakazato, Shiomi K, Cheng SY, Furihata K, Ueno I, and
Yanagisawa N. (1994). Familial amyloid polyneuropathy in Taiwan: Identification of transthyretin variant
(Leu55 to Pro) Muscle – Nerve. 17:637-641.
- Almeida MR, and Saraiva MJ. (1996). Thyroxine binding to transthyretin (TTR) variants — two variants
(TTR Pro 55 and TTR Met 111) with a particularly low binding affinity. Eur J Endocrinol. 135:226-230.
- Chou CT, Lee CC, Chang DM, Buxbaum JN, and Jacobson DR. (1997). Familial amyloidosis in one
Chinese family: clinical, immunological, and molecular genetic analysis. J Intern Med. 241:327-331.
- Quintas A, Saraiva MJM, and Brito RMM. (1997). The amyloidogenic potential of transthyretin variants
correlates with their tendency to aggregate in solution. FEBS Letters. 418:297-300.
- Sebastiao MP, Saraiva MJ, and Damas AM. (1998). The crystal structure of amyloidogenic Leu55–>Pro
transthyretin variant reveals a possible pathway for transthyretin polymerization into amyloid fibrils.
J Biol Chem. 273:24715-24722.
Studies on Therapeutic Strategy*
- Cardoso I, Merlini G, Saraiva MJ. 4’-iodo-4’-deoxydoxorubicin and tetracyclines
disrupt transthyretin amyloid fibrils in vitro producing noncytotoxic species:
screening for TTR fibril disrupters. FASEB J. 2003;17: 803–809.
doi:10.1096/fj.02-0764com
*includes studies on model organisms and commercially unavailable drugs
Available PDB Structures