TTRMDb
An amyloid disease database for transthyretin mutants
Sequence
Analysis Tool |
Result |
iMutant 3.0 | Stabilizing |
STRUM | Destabilizing |
iStable | Stabilizing |
Provean | Deleterious |
PredictSNP | Deleterious |
PhD-SNP | Neutral |
PolyPhen-2 | Deleterious |
SIFT | Deleterious |
FATHMM | Damaging |
Structure
Analysis Tool |
Result |
mCSM | Destabilizing |
SDM | Stabilizing |
DUET | Stabilizing |
DynaMut | Destabilizing |
CUPSAT | Destabilizing |
ENCoM | Destabilizing |
FoldX (Protein Stability) | Slightly Reduces |
Aggregation
Analysis Tool |
Result |
TANGO (Aggregation Tendency) | No effect |
WALTZ (Amyloid Propensity) | No effect |
LIMBO (Chaperone Binding Tendency) | No effect |
Reported Articles
- Saeki Y, Ueno S, Takahashi N, Soga F, and Yanagihara T. (1992). A novel mutant (transthyretin Ile-50)
related to amyloid polyneuropathy. FEBS Lett. 308:35.
- Nishi H, Kimura A, Harada H, Hayashi Y, Nakamura M, and Sasazuki T. (1992). Novel variant transthyretin
gene (Ser50 to Ile) in familial cardiac amyloidosis. Biochem Biophys Res Commun. 187:460-466.
- Date Y, Nakazato M, Kangawa K, Shirieda K, Fujimoto T, and Matsukura S. (1997). Detection of three
transthyretin gene mutation in familial amyloidotic polyneuropathy by analysis of DNA extracted form
formalin-fixed and paraffin-embedded tissues. J Neurol Sci. 150:143-148.
- Mambule C, Ando Y, Nakamura M, Kusunose Y, Obayashi K, Tashima K, Ando E, Yamashita T, Terazaki H,
Uchino M, and Ando M. (1999). Clinical Manifestations of Familial Amyloidotic Polyneuropathy (FAP)
(ATTR Thr49Ile). The 4th Int’l Symp on FAP and Other TTR Related Disorders. Umeå Sweden, June 1999.
- Sakashita N, Ando Y, Obayashi K, Terazaki H, Yamashita T, Takei M, and Takahashi K. (1999). Familial
amyloidotic polyneuropathy (Ser50Ile): The first autopsy case report. The 4th International Symposium on
FAP and Other TTR Related Disorders. Umeå Sweden, June 1999.
- Sakashita N, Ando Y, Obayashi K, Terazaki H, Yamashita T, Takei M, Kinjo M, and Takahashi K. (1999).
Familial amyloidotic polyneuropathy (Ser50Ile): The first autopsy case report. Virchows Arch. 436:345-350.
Studies on Therapeutic Strategy*
- Tojo K, Sekijima Y, Kelly JW, Ikeda S. Diflunisal stabilizes familial amyloid
polyneuropathy-associated transthyretin variant tetramers in serum against
dissociation required for amyloidogenesis. Neuroscience Research.
2006;56: 441–449. doi:10.1016/j.neures.2006.08.014
- Adams D, Gonzalez-Duarte A, O’Riordan WD, Yang C-C, Ueda M, Kristen AV, et
al. Patisiran, an RNAi Therapeutic, for Hereditary Transthyretin Amyloidosis.
N Engl J Med. 2018;379: 11–21. doi:10.1056/NEJMoa1716153
*includes studies on model organisms and commercially unavailable drugs