TTRMDb
An amyloid disease database for transthyretin mutants
Sequence
Analysis Tool |
Result |
iMutant 3.0 | Stabilizing |
STRUM | Destabilizing |
iStable | Stabilizing |
Provean | Deleterious |
PredictSNP | Deleterious |
PhD-SNP | Deleterious |
PolyPhen-2 | Deleterious |
SIFT | Deleterious |
FATHMM | Damaging |
Structure
Analysis Tool |
Result |
mCSM | Destabilizing |
SDM | Stabilizing |
DUET | Destabilizing |
DynaMut | Destabilizing |
CUPSAT | Stabilizing |
ENCoM | Destabilizing |
FoldX (Protein Stability) | No effect |
Aggregation
Analysis Tool |
Result |
TANGO (Aggregation Tendency) | No effect |
WALTZ (Amyloid Propensity) | No effect |
LIMBO (Chaperone Binding Tendency) | No effect |
Reported Articles
- Altland K, Benson MD, Costello CE, Ferlini A, Hazenberg BPC, Hund E, et al. Genetic microheterogeneity
of human transthyretin detected by IEF. ELECTROPHORESIS. 2007;28: 2053–2064.
doi:10.1002/elps.200600840
- Wallace MR, Dwulet FE, Williams EC, Conneally PM, Benson MD. Identification of a new
hereditary amyloidosis prealbumin variant, Tyr-77, and detection of the gene by DNA
analysis. J Clin Invest. 1988;81: 189–193. doi:10.1172/JCI113293
Studies on Therapeutic Strategy*
- Merlini G, Planté-Bordeneuve V, Judge DP, Schmidt H, Obici L, Perlini S, et al.
Effects of Tafamidis on Transthyretin Stabilization and Clinical Outcomes in
Patients with Non-Val30Met Transthyretin Amyloidosis. J Cardiovasc Transl Res.
2013;6: 1011–1020. doi:10.1007/s12265-013-9512-x
- Coelho T, Adams D, Silva A, Lozeron P, Hawkins PN, Mant T, et al. Safety and
efficacy of RNAi therapy for transthyretin amyloidosis. N Engl J Med.
2013;369: 819–829. doi:10.1056/NEJMoa1208760
- Adams D, Gonzalez-Duarte A, O’Riordan WD, Yang C-C, Ueda M, Kristen AV, et
al. Patisiran, an RNAi Therapeutic, for Hereditary Transthyretin Amyloidosis.
N Engl J Med. 2018;379: 11–21. doi:10.1056/NEJMoa1716153
- Benson MD, Waddington-Cruz M, Berk JL, Polydefkis M, Dyck PJ, Wang AK, et
al. Inotersen Treatment for Patients with Hereditary Transthyretin Amyloidosis.
N Engl J Med. 2018;379: 22–31. doi:10.1056/NEJMoa1716793
*includes studies on model organisms and commercially unavailable drugs