TTRMDb
An amyloid disease database for transthyretin mutants
Sequence
Analysis Tool |
Result |
iMutant 3.0 | Destabilizing |
STRUM | Destabilizing |
iStable | Destabilizing |
Provean | Neutral |
PredictSNP | Deleterious |
PhD-SNP | Neutral |
PolyPhen-2 | Deleterious |
SIFT | Deleterious |
FATHMM | Damaging |
Structure
Analysis Tool |
Result |
mCSM | Destabilizing |
SDM | Destabilizing |
DUET | Destabilizing |
DynaMut | Destabilizing |
CUPSAT | Destabilizing |
ENCoM | Destabilizing |
FoldX (Protein Stability) | No effect |
Aggregation
Analysis Tool |
Result |
TANGO (Aggregation Tendency) | No effect |
WALTZ (Amyloid Propensity) | No effect |
LIMBO (Chaperone Binding Tendency) | Decreases |
Reported Articles
- Nakazato M, Ikeda S, Shiomi K, Matsukura S, Yoshida K, Shimizu H, Atsumi T, Kangawa K, and Matsuo H.
(1992). Identification of a novel transthyretin variant (Val30 to Leu) associated with familial amyloidotic
polyneuropathy. FEBS Lett. 306:206-208.
- Murakami T, Atsumi T, Maeda S, Tanase S, Ishikawa K, Mita A, Kumamoto T, Araki S, and Ando M. (1992). A novel transthyretin mutation at position 30 (Leu for Val) associated with familial amyloidotic polyneuropathy. Biochem Biophys Res Commun. 187:397-403.
- Utsugisawa K, Tohgi H, Nagane Y, Yamagata M, Saito K and Mihara M. (1998). Familial amyloid
polyneuropathy related to transthyretin mutation Val30 to Leu in a Japanese family. Muscle Nerve.
21:1783-1785.
- Tachibana N, Tokuda T, Yoshida K, Taketomi T, Nakazato M, Li YF, Masuda Y, and Ikeda S. (1999).
Usefulness of MALDI/TOF mass spectrometry of immunoprecipitated serum variant transthyretin in the
diagnosis of familial amyloid polyneuropathy. Amyloid. 6:282-8.
- Yazaki M, Tokuda T, Nakamura A, Higashikata T, Koyama J, Higuchi K, Harihara Y, Baba S, Kametani F, and
Ikeda S. (2000). Cardiac amyloid in patiants with familial amyloid polyneuropathy consists of abundant
wild-type transthyretin. Biochem Biophys Res Commun. 274:702-706.
Studies on Therapeutic Strategy*
- Tojo K, Sekijima Y, Kelly JW, Ikeda S. Diflunisal stabilizes familial amyloid
polyneuropathy-associated transthyretin variant tetramers in serum against dissociation required for amyloidogenesis. Neuroscience Research. 2006;56: 441–449. doi:10.1016/j.neures.2006.08.014
*includes studies on model organisms and commercially unavailable drugs