TTRMDb
An amyloid disease database for transthyretin mutants
Sequence
Analysis Tool |
Result |
iMutant 3.0 | Destabilizing |
STRUM | Destabilizing |
iStable | Destabilizing |
Provean | Neutral |
PredictSNP | Deleterious |
PhD-SNP | Deleterious |
PolyPhen-2 | Deleterious |
SIFT | Deleterious |
FATHMM | Damaging |
Structure
Analysis Tool |
Result |
mCSM | Destabilizing |
SDM | Destabilizing |
DUET | Destabilizing |
DynaMut | Destabilizing |
CUPSAT | Destabilizing |
ENCoM | Destabilizing |
FoldX (Protein Stability) | Reduces |
Aggregation
Analysis Tool |
Result |
TANGO (Aggregation Tendency) | No effect |
WALTZ (Amyloid Propensity) | No effect |
LIMBO (Chaperone Binding Tendency) | No effect |
Reported Articles
- Altland K, Benson MD, Costello CE, Ferlini A, Hazenberg BPC, Hund E, et al. Genetic microheterogeneity
of human transthyretin detected by IEF. ELECTROPHORESIS. 2007;28: 2053–2064.
doi:10.1002/elps.200600840
- Dwulet FE and Benson MD. (1983). Polymorphisms of human plasma thyroxine binding prealbumin.
Biochem Biophys Res Commun. 114:657-662.
- Saraiva MJ, Costa PP, Birken S, and Goodman DS. (1983). Presence of an abnormal transthyretin
(prealbumin) in Portuguese patients with familial amyloidotic polyneuropathy. Trans Assoc Am Physicians.
96:261-270.
- Tawara S, Nakazato M, Kangawa K, Matsuo H, and Araki S. (1983). Identification of amyloid prealbumin
variant in familial amyloidotic polyneuropathy (Japanese type). Biochem Biophys Res Commun.
116:880-888.
- Nakazato M, Kangawa K, Minamino N, Tawara S, Matsuo H, and Araki S. (1984). Identification of a
prealbumin variant in the serum of a Japanese patient with familial amyloidotic polyneuropathy.
Biochem Biophys Res Commun. 122:712-718.
- Lemos C, Coelho T, Alves-Ferreira M, Santos D, Sequeiros J, Sousa A. Unravelling the epidemiology of
late-onset and asymptomatic carriers of FAP ATTR V30M in a Portuguese population.
Orphanet J Rare Dis. 2015;10: O3. doi:10.1186/1750-1172-10-S1-O3
- Santos D, Coelho T, Alves-Ferreira M, Sequeiros J, Alonso I, Grazina M, et al. The hidden story behind
gender differences in familial amyloid polyneuropathy (FAP) ATTRV30M.
Orphanet J Rare Dis. 2015;10: O4. doi:10.1186/1750-1172-10-S1-O4
- Koike H, Ikeda S, Takahashi M, Kawagashira Y, Iijima M, Katsuno M, et al. Vasculopathy in transthyretin
Val30Met familial amyloid polyneuropathy. Orphanet J Rare Dis. 2015;10: O11.
doi:10.1186/1750-1172-10-S1-O11
- Conceição I, Silva C, Costa M, Castro J. Neurophysiological pitfalls in TTR-FAP Val30Met.
Orphanet J Rare Dis. 2015;10: O12. doi:10.1186/1750-1172-10-S1-O12
- Ueda M, Yamashita T, Misumi Y, Masuda T, Ando Y. Origin of sporadic late-onset hereditary ATTR Val30Met
amyloidosis in Japan. Amyloid. 2018;25: 143–147. doi:10.1080/13506129.2018.1531842
Studies on Therapeutic Strategy*
- Hosoi A, Su Y, Torikai M, Jono H, Ishikawa D, Soejima K, et al. Novel
Antibody for the Treatment of Transthyretin Amyloidosis. J Biol Chem.
2016;291: 25096–25105. doi:10.1074/jbc.M116.738138
- Gonçalves P, Martins H, Costelha S, Maia LF, Saraiva MJ.
Efficiency of silencing RNA for removal of transthyretin V30M
in a TTR leptomeningeal animal model. Amyloid.
2016;23: 249–253. doi:10.1080/13506129.2016.1256282
- Tojo K, Sekijima Y, Kelly JW, Ikeda S. Diflunisal stabilizes familial amyloid
polyneuropathy-associated transthyretin variant tetramers in serum against
dissociation required for amyloidogenesis. Neuroscience Research.
2006;56: 441–449. doi:10.1016/j.neures.2006.08.014
- Coelho T, Maia LF, Martins da Silva A, Waddington Cruz M, Planté-Bordeneuve V
, Lozeron P, et al. Tafamidis for transthyretin familial amyloid polyneuropathy: a
randomized, controlled trial. Neurology.
2012;79: 785–792. doi:10.1212/WNL.0b013e3182661eb1
- Kurosawa T, Igarashi S, Nishizawa M, Onodera O. Selective silencing of a
mutant transthyretin allele by small interfering RNAs. Biochem Biophys Res
Commun. 2005;337: 1012–1018. doi:10.1016/j.bbrc.2005.09.142
- Coelho T, Adams D, Silva A, Lozeron P, Hawkins PN, Mant T, et al. Safety and
efficacy of RNAi therapy for transthyretin amyloidosis. N Engl J Med.
2013;369: 819–829. doi:10.1056/NEJMoa1208760
- Cardoso I, Martins D, Ribeiro T, Merlini G, Saraiva MJ. Synergy of combined
doxycycline/TUDCA treatment in lowering Transthyretin deposition and
associated biomarkers: studies in FAP mouse models.
J Transl Med. 2010;8: 74. doi:10.1186/1479-5876-8-74
- Benson MD, Waddington-Cruz M, Berk JL, Polydefkis M, Dyck PJ, Wang AK, et
al. Inotersen Treatment for Patients with Hereditary Transthyretin Amyloidosis.
N Engl J Med. 2018;379: 22–31. doi:10.1056/NEJMoa1716793
- Adams D, Gonzalez-Duarte A, O’Riordan WD, Yang C-C, Ueda M, Kristen AV, et
al. Patisiran, an RNAi Therapeutic, for Hereditary Transthyretin Amyloidosis.
N Engl J Med. 2018;379: 11–21. doi:10.1056/NEJMoa1716153
*includes studies on model organisms and commercially unavailable drugs
Available PDB Structures