TTRMDb
An amyloid disease database for transthyretin mutants
Sequence
Analysis Tool |
Result |
iMutant 3.0 | Stabilizing |
STRUM | Stabilizing |
iStable | Destabilizing |
Provean | Deleterious |
PredictSNP | Deleterious |
PhD-SNP | Deleterious |
PolyPhen-2 | Deleterious |
SIFT | Deleterious |
FATHMM | Damaging |
Structure
Analysis Tool |
Result |
mCSM | Destabilizing |
SDM | Stabilizing |
DUET | Destabilizing |
DynaMut | Destabilizing |
CUPSAT | Stabilizing |
ENCoM | Destabilizing |
FoldX (Protein Stability) | No effect |
Aggregation
Analysis Tool |
Result |
TANGO (Aggregation Tendency) | No effect |
WALTZ (Amyloid Propensity) | No effect |
LIMBO (Chaperone Binding Tendency) | No effect |
Reported Articles
- Karlsson A, Olofsson A, Eneqvist T, Sauer-Eriksson AE. Cys114-Linked Dimers of Transthyretin Are
Compatible with Amyloid Formation,. Biochemistry. 2005;44: 13063–13070. doi:10.1021/bi050795s
- Ueno S, Uemichi T, Yorifuji S, and Tarui S. (1990). A novel variant of transthyretin (Tyr114 to Cys) deduced
from the nucleotide sequences of gene fragments from familial amyloidotic polyneuropathy in Japanese
sibling cases. Biochem Biophys Res Commun. 169:143-147
- Uemichi T, Ueno S, Takahashi N, Soga F, Yorifuji S, and Tarui S. (1991). DNA tests for mutant genes coding
for transthyretins Gly42, Arg50, and Cys114 in Japanese cases of familial amyloid polyneuropathy.
Rinsho Shinikeigaku. 31:1151-1154
- Ueno S, Fujimura H, Yorifuji S, Nakamura Y, Takahashi M, Tarui S, and Yanagihara T. (1992). Familial
amyloid polyneuropathy associated with the transthyretin cys114 gene in a Japanese kindred. Brain.
115:1275-1289
- Ando Y, Almeida M, Ohlsson PI, Ando E, Negi A, Suhr O, Terazaki H, Obayashi K, Ando M and Saraiva MJ.
(1999). Unusual self-association properties of transthyretin Y114C related to familial amyloidotic
polyneuropathy: effects on detection and quantitiation. Biochem Biophys Res Commun. 261:264-269
- Ando Y, Yamashia T, Ando E, Terazaki H, Obayashi K, Fujise N, Ohlsson P-I, Suhr OB, Negi A, Ando M, and
Miyakawa T. (1999). Analysis of vitreous amyloid of patients with familial amyloidotic polyneuropathy
(FAP ATTR Tyr114Cys) The 4th Int’l Symp on FAP and Other TTR Related Disorders. Umeå Sweden,
June 1999
Studies on Therapeutic Strategy*
- Adams D, Gonzalez-Duarte A, O’Riordan WD, Yang C-C, Ueda M, Kristen AV, et
al. Patisiran, an RNAi Therapeutic, for Hereditary Transthyretin Amyloidosis.
N Engl J Med. 2018;379: 11–21. doi:10.1056/NEJMoa1716153
- Tojo K, Sekijima Y, Kelly JW, Ikeda S. Diflunisal stabilizes familial amyloid
polyneuropathy-associated transthyretin variant tetramers in serum against
dissociation required for amyloidogenesis. Neuroscience Research.
2006;56: 441–449. doi:10.1016/j.neures.2006.08.014
*includes studies on model organisms and commercially unavailable drugs
Available PDB Structures