TTRMDb
An amyloid disease database for transthyretin mutants
Sequence
Analysis Tool |
Result |
iMutant 3.0 | Destabilizing |
STRUM | Destabilizing |
iStable | Destabilizing |
Provean | Deleterious |
PredictSNP | Deleterious |
PhD-SNP | Deleterious |
PolyPhen-2 | Deleterious |
SIFT | Deleterious |
FATHMM | Damaging |
Structure
Analysis Tool |
Result |
mCSM | Destabilizing |
SDM | Stabilizing |
DUET | Destabilizing |
DynaMut | Destabilizing |
CUPSAT | Stabilizing |
ENCoM | Destabilizing |
FoldX (Protein Stability) | Slightly Reduces |
Aggregation
Analysis Tool |
Result |
TANGO (Aggregation Tendency) | No effect |
WALTZ (Amyloid Propensity) | No effect |
LIMBO (Chaperone Binding Tendency) | No effect |
Reported Articles
- Murakami T, Tachiban S, Endo Y, Kawai R, Hara M, Tanase S, and Ando M. (1994). Familial carpal tunnel
syndrome due to amyloidogenic transthyretin His114 variant. Neurology. 44:315-318
- Mochizuki H, Kamakura K, Masaki T, Hirata A, Tokuda T, Yazaki M, Motoyoshi K, and Ikeda S. (2001).
Nodular cutaneous amyloidosis and carpal tunnel syndrome due to the amyloidogenic transthyretin His 114
variant. Amyloid. 8(2):105-110
Studies on Therapeutic Strategy*
- Tojo K, Sekijima Y, Kelly JW, Ikeda S. Diflunisal stabilizes familial amyloid
polyneuropathy-associated transthyretin variant tetramers in serum against
dissociation required for amyloidogenesis. Neuroscience Research.
2006;56: 441–449. doi:10.1016/j.neures.2006.08.014
*includes studies on model organisms and commercially unavailable drugs
Available PDB Structures